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Abstract The Florida Everglades is a critically important, but highly threatened ecosystem that is becoming increasingly susceptible to the invasion of non-native species. This study investigated the ecological role of the invasive peacock eel (Macrognathus siamensis) within this ecosystem using 15 years of electrofishing data and stable isotope analysis. We investigated the population trends of peacock eels at the marsh-mangrove ecotone of the Shark River Estuary, the environmental factors contributing to their abundance, and the potential interactions they may have with native fish assemblages and coastal food webs. We used stable isotope analysis to provide insights into the basal resource contribution to peacock eels and hypervolume analysis to determine peacock eel trophic niche size and overlap with native species. Results of this study found that peacock eel abundance has rapidly increased, and their populations are strongly related to hydroclimatic regimes. Peacock eel abundance was positively associated with warmer water temperatures and greater marsh inundation periods. The trophic niche of peacock eels was significantly smaller in volume than that of native sunfishes (Lepomisspp.) indicating lower intraspecific resource use variability and suggesting a limited potential for inter-specific competition with these taxa. However, in recent years, the catch of peacock eels has outnumbered the catch of all native sunfishes combined. The feeding habits and pervasiveness of peacock eels in the coastal Everglades could lead to a decrease in abundance of benthic prey items targeted by peacock eels and alter food web dynamics in the system. Based on these data, peacock eel populations are predicted to continue to increase, highlighting the importance of continued monitoring of their potential impact on native fish assemblages and food webs. 

This dataset contains nitrogen and phosphorus excretion rate, as well as dry biomass, estimates for individual vertebrate and invertebrate animals in marine and estuarine environments. This dataset is a product of an LTER Synthesis Working Group aimed at evaluating the spatiotemporal variability in consumer nutrient dynamics in the wake of global change across eight long-term ecological research projects. These projects include seven long-term ecological research programs (LTER) funded by the National Science Foundation: (1) California Current Ecosystem, (2) Florida Coastal Everglades, (3) Moorea Coral Reef, (4) Northern Gulf of Alaska, (5) Plum Island Ecosystems, (6) Santa Barbara Coastal, and (7) Virginia Coast Reserve LTER projects. Additionally, the dataset includes data from (8) The Partnership for Interdisciplinary Science of Coastal Oceans (PISCO) research program. The temporal coverage of each time series data varies among projects, with the earliest record in 1997 and the most recent in 2023. This data package also includes two folders of R scripts used for data harmonization, identical to those in the LTER Synthesis Working Group: Consumer-Mediated Nutrient Dynamics Project, v2.0.0. You can find the release in GitHub here: https://github.com/lter/lterwg-marine-cnd/releases/tag/v2.0.0 

Abstract Natural and anthropogenic disturbances have led to rapid declines in the amount and quality of available habitat in many ecosystems. Many studies have focused on how habitat loss has affected the composition and configuration of habitats, but there have been fewer studies that investigate how this loss affects ecosystem function. We investigated how a large‐scale seagrass die‐off altered the distribution of energetic resources of three seagrass‐associated consumers with varied resource use patterns. Using long‐term benthic habitat monitoring data and resource use data from Bayesian stable isotope mixing models, we generated energetic resource landscapes (E‐scapes) annually between 2007 and 2019.E‐scapes link the resources being used by a consumer to the habitats that produce those resources to calculate a habitat resource index as a measurement of energetic quality of the landscape. Overall, our results revealed that following the die‐off there was a reduction in trophic function across all species in areas affected by the die‐off event, but the response was species‐specific and dependent on resource use and recovery patterns. This study highlights how habitat loss can lead to changes in ecosystem function. Incorporating changes in ecosystem function into models of habitat loss could improve understanding of how species will respond to future change. 

Abstract Riverine floodplains serve as an important link between terrestrial and aquatic systems, as the rising and falling of water drive spatial food web subsidies that are critical to the functioning and stability of ecosystems. As these systems are increasingly impacted by hydrological alterations and climate change, it is important to understand how floodplain spatial food web subsidies may respond to changing environmental conditions.Here, we examine the interannual variation in the structure of a sunfish (Lepomisspp.) prey subsidy from freshwater marshes into the mangrove‐lined creeks of Rookery Branch in the Florida Coastal Everglades that occurs during seasonal dry downs. We evaluate how the structure of this subsidy relates to prior temperature and hydrological regimes based on a 16‐year electrofishing dataset. We also characterise the intra‐annual relationship between marsh water depths and sunfish migration patterns that underlie this subsidy.We found that interannual variation in the abundance and diversity of the sunfish prey subsidy was best explained by the minimum water temperature occurring within 90 days prior to peak abundance sampling periods, with lower minimum water temperatures associated with higher sunfish abundance and diversity. In contrast, interannual variations in the biomass of the sunfish prey subsidy were positively related to marsh flooding duration over 30 cm depth during the prior wet season. Intra‐annual models estimated peak sunfish abundance and biomass values in riverine habitats to occur during the transition between wet and dry periods when marsh depths are between 10 and 15 cm.Multivariate analysis of community abundance and biomass composition revealed that minimum water temperatures played an important role in structuring the prey subsidy, while the effect of flooding duration was weak. These results provide important insight into how floodplain prey subsidies may be altered under future climate and hydrological regimes and inform ecosystem‐based water management decisions. 

Seagrass beds in Florida Bay are home to many ecologically and economically important species. Anthropogenic press perturbation via alterations in hydrology and pulse perturbations such as drought can lead to hypersalinity, hypoxia, and sulfide toxicity, ultimately causing seagrass die-offs. Florida Bay has undergone two large-scale seagrass die-offs, the first in the late 1980s and early 1990s and the second in 2015. Post-die-off events, samples were collected for stable isotope analysis. Using historical (1998–1999) and contemporary (2018) stable isotope data, we examine how food webs in Florida Bay have changed in response to seagrass die-off over time by measuring contributions of basal sources to energy usage and using trophic niche analysis to compare niche size and overlap. We examined three consumer species sampled in both time periods (Orthopristis chrysoptera, Lagodon rhomboides, and Eucinostomus gula) in our study. Seagrass production comprised the majority of source usage in both datasets. However, contemporary consumers had a mean increase of 18% seagrass usage and a mean decrease in epiphyte usage of 7%. The shift in trophic niche from epiphyte usage (green pathway) toward seagrass usage (brown pathway) may indicate that food web browning is occurring in Florida Bay. 

In New England saltmarshes, mummichogs (Fundulus heteroclitus) connect the vegetated marsh and creek food webs by opportunistically foraging on the invertebrate communities of the marsh surface when access is permitted by tidal flooding and marsh-edge geomorphology. Via their movements, mummichog represent a critical food web node, as they can potentially transport energy from the marsh surface food web to creek food web and exert top-down control on the communities of the vegetated marsh surface. Here, we demonstrate that access to the marsh surface (afforded by marsh-edge geomorphology) did not impact mummichog distribution across the marsh platform and exhibited no evidence of top-down control on their invertebrate prey. Thus, mummichogs function as initial nodes in the trophic relay, unidirectionally moving energy from the vegetated marsh to the creek food web. Reduced marsh surface access via altered marsh-edge geomorphology results in a 50% to 66% reduction in total energy available to aquatic predators via this route. Estuarine systems are intimately connected to coastal and offshore systems via consumer mediated flows of energy; thus, disruptions to the trophic relay from the marsh surface at the tidal creek scale can have far reaching impacts on secondary productivity in multiple disparate systems and must be accounted for in considerations of impacts to future food-web function. 

Abstract Macrophyte foundation species provide both habitat structure and primary production, and loss of these habitats can alter species interactions and lead to changes in energy flow in food webs. Extensive seagrass meadows in Florida Bay have recently experienced a widespread loss of seagrass habitat due to a Thalassia testudinum mass mortality event in 2015 associated with prolonged hypersalinity and bottom-water anoxia. Using stable isotope analysis paired with Bayesian mixing models, we investigated the basal resource use of seven species of seagrass-associated consumers across Florida Bay in areas affected by the 2015 seagrass die-off. Three years after the die-off, basal resource use did not differ for species collected inside and outside the die-off affected areas. Instead, consumers showed seasonal patterns in basal resource use with seagrass the most important in the wet season (58%), while epiphytes were the most important in the dry season (44%). Additionally, intraspecific spatial variability in resource use was lower in the wet season compared to the dry season. We were unable to detect a legacy effect of a major disturbance on the basal resource use of the most common seagrass-associated consumers in Florida Bay. 

The use of nutrients by diverse phytoplankton communities in estuarine systems, and their response to changes in physical and biogeochemical processes in these natural systems, is a significant ongoing area of research. We used a whole ecosystem 15NO3− tracer experiment to determine the uptake of different nitrogen (N) forms in phytoplankton functional groups over a mid- to neap tidal cycle in a salt marsh creek in Plum Island Estuary, Massachusetts, USA. We quantified the biomass and δ15N for three groups corresponding to micro- (20–200 μm; microP), nano- (3–20 μm; nanoP), and picophytoplankton (< 3 μm; picoP). All three size classes showed distinct use of recycled N sources throughout the 11-day sampling period and minimal direct assimilation of the 15NO3− tracer. MicroP consistently used high amounts of creek-derived 15NH4+, even with a shift at neap tide from diatom- to dinoflagellate-dominated communities (including members of the harmful genus Alexandrium). NanoP use of recycled 15NH4+ increased over the mid-neap tidal cycle, while picoP use decreased. Both biomass and NH4+ use (as highest δ15N values) of all size groups were maximized during neap tide. This study demonstrates partitioning of recycled N use among size-based phytoplankton groups in the estuary, with distinct effects of tidal cycle on the nutrient uptake of each group, and with important implications for the roles of diverse phytoplankton communities in estuarine nutrient cycling.